Difference between revisions of "SFPQ"

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'''Splicing factor, proline- and glutamine-rich''' is a [[protein]] that in humans is encoded by the ''SFPQ'' [[gene]].<ref name="pmid8449401">{{cite journal | vauthors = Patton JG, Porro EB, Galceran J, Tempst P, Nadal-Ginard B | title = Cloning and characterization of PSF, a novel pre-mRNA splicing factor | journal = Genes & Development | volume = 7 | issue = 3 | pages = 393–406 | date = Mar 1993 | pmid = 8449401 | pmc =  | doi = 10.1101/gad.7.3.393 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6421| accessdate = }}</ref>
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== Interactions ==
{{GNF_Protein_box
 
| image =
 
| image_source =
 
| PDB =  
 
| Name = Splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)
 
| HGNCid = 10774
 
| Symbol = SFPQ
 
| AltSymbols =; PSF; POMP100
 
| OMIM = 605199
 
| ECnumber = 
 
| Homologene = 3714
 
| MGIid = 1918764
 
| GeneAtlas_image1 = PBB_GE_SFPQ_201586_s_at_tn.png
 
| GeneAtlas_image2 = PBB_GE_SFPQ_201585_s_at_tn.png
 
| GeneAtlas_image3 = PBB_GE_SFPQ_214016_s_at_tn.png
 
| Function = {{GNF_GO|id=GO:0000166 |text = nucleotide binding}} {{GNF_GO|id=GO:0003677 |text = DNA binding}} {{GNF_GO|id=GO:0003723 |text = RNA binding}} {{GNF_GO|id=GO:0005515 |text = protein binding}}
 
| Component = {{GNF_GO|id=GO:0005634 |text = nucleus}}
 
| Process = {{GNF_GO|id=GO:0006281 |text = DNA repair}} {{GNF_GO|id=GO:0006310 |text = DNA recombination}} {{GNF_GO|id=GO:0006350 |text = transcription}} {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0006397 |text = mRNA processing}} {{GNF_GO|id=GO:0008380 |text = RNA splicing}}
 
| Orthologs = {{GNF_Ortholog_box
 
    | Hs_EntrezGene = 6421
 
    | Hs_Ensembl = ENSG00000116560
 
    | Hs_RefseqProtein = NP_005057
 
    | Hs_RefseqmRNA = NM_005066
 
    | Hs_GenLoc_db = 
 
    | Hs_GenLoc_chr = 1
 
    | Hs_GenLoc_start = 35414571
 
    | Hs_GenLoc_end = 35431336
 
    | Hs_Uniprot = P23246
 
    | Mm_EntrezGene = 71514
 
    | Mm_Ensembl = ENSMUSG00000028820
 
    | Mm_RefseqmRNA = XM_981759
 
    | Mm_RefseqProtein = XP_986853
 
    | Mm_GenLoc_db = 
 
    | Mm_GenLoc_chr = 4
 
    | Mm_GenLoc_start = 126523639
 
    | Mm_GenLoc_end = 126533100
 
    | Mm_Uniprot = Q3TZL2
 
  }}
 
}}
 
'''Splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)''', also known as '''SFPQ''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6421| accessdate = }}</ref>
 
  
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SFPQ has been shown to [[Protein-protein interaction|interact]] with [[PTBP1]],<ref name=pmid8449401 /><ref name=pmid10653975>{{cite journal | vauthors = Meissner M, Dechat T, Gerner C, Grimm R, Foisner R, Sauermann G | title = Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB | journal = Journal of Cellular Biochemistry | volume = 76 | issue = 4 | pages = 559–66 | date = Jan 2000 | pmid = 10653975 | doi = 10.1002/(SICI)1097-4644(20000315)76:4<559::AID-JCB4>3.0.CO;2-U }}</ref> [[NONO]],<ref name=pmid12403470>{{cite journal | vauthors = Peng R, Dye BT, Pérez I, Barnard DC, Thompson AB, Patton JG | title = PSF and p54nrb bind a conserved stem in U5 snRNA | journal = RNA | volume = 8 | issue = 10 | pages = 1334–47 | date = Oct 2002 | pmid = 12403470 | pmc = 1370341 | doi = 10.1017/S1355838202022070 }}</ref> [[CDC5L]]<ref name=pmid11101529>{{cite journal | vauthors = Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI | title = Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry | journal = The EMBO Journal | volume = 19 | issue = 23 | pages = 6569–81 | date = Dec 2000 | pmid = 11101529 | pmc = 305846 | doi = 10.1093/emboj/19.23.6569 }}</ref> and [[Ubiquitin C]].<ref name=pmid16169070>{{cite journal | vauthors = Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE | title = A human protein-protein interaction network: a resource for annotating the proteome | journal = Cell | volume = 122 | issue = 6 | pages = 957–68 | date = Sep 2005 | pmid = 16169070 | doi = 10.1016/j.cell.2005.08.029 }}</ref>
{{PBB_Summary
 
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| summary_text =  
 
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==References==
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== References ==
{{reflist|2}}
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{{reflist}}
==Further reading==
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== Further reading ==
 
{{refbegin | 2}}
 
{{refbegin | 2}}
{{PBB_Further_reading
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* {{cite journal | vauthors = Shav-Tal Y, Zipori D | title = PSF and p54(nrb)/NonO--multi-functional nuclear proteins | journal = FEBS Letters | volume = 531 | issue = 2 | pages = 109–14 | date = Nov 2002 | pmid = 12417296 | doi = 10.1016/S0014-5793(02)03447-6 }}
| citations =
+
* {{cite journal | vauthors = Gower HJ, Moore SE, Dickson G, Elsom VL, Nayak R, Walsh FS | title = Cloning and characterization of a myoblast cell surface antigen defined by 24.1D5 monoclonal antibody | journal = Development | volume = 105 | issue = 4 | pages = 723–31 | date = Apr 1989 | pmid = 2480877 | doi =  }}
*{{cite journal | author=Shav-Tal Y, Zipori D |title=PSF and p54(nrb)/NonO--multi-functional nuclear proteins. |journal=FEBS Lett. |volume=531 |issue= 2 |pages= 109-14 |year= 2002 |pmid= 12417296 |doi= }}
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* {{cite journal | vauthors = Gozani O, Patton JG, Reed R | title = A novel set of spliceosome-associated proteins and the essential splicing factor PSF bind stably to pre-mRNA prior to catalytic step II of the splicing reaction | journal = The EMBO Journal | volume = 13 | issue = 14 | pages = 3356–67 | date = Jul 1994 | pmid = 8045264 | pmc = 395233 | doi =  }}
*{{cite journal | author=Gower HJ, Moore SE, Dickson G, ''et al.'' |title=Cloning and characterization of a myoblast cell surface antigen defined by 24.1D5 monoclonal antibody. |journal=Development |volume=105 |issue= 4 |pages= 723-31 |year= 1990 |pmid= 2480877 |doi=  }}
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* {{cite journal | vauthors = Zhang WW, Zhang LX, Busch RK, Farrés J, Busch H | title = Purification and characterization of a DNA-binding heterodimer of 52 and 100 kDa from HeLa cells | journal = The Biochemical Journal | volume = 290 | issue = 1 | pages = 267–72 | date = Feb 1993 | pmid = 8439294 | pmc = 1132410 | doi =  10.1042/bj2900267}}
*{{cite journal | author=Gozani O, Patton JG, Reed R |title=A novel set of spliceosome-associated proteins and the essential splicing factor PSF bind stably to pre-mRNA prior to catalytic step II of the splicing reaction. |journal=EMBO J. |volume=13 |issue= 14 |pages= 3356-67 |year= 1994 |pmid= 8045264 |doi=  }}
+
* {{cite journal | vauthors = Clark J, Lu YJ, Sidhar SK, Parker C, Gill S, Smedley D, Hamoudi R, Linehan WM, Shipley J, Cooper CS | title = Fusion of splicing factor genes PSF and NonO (p54nrb) to the TFE3 gene in papillary renal cell carcinoma | journal = Oncogene | volume = 15 | issue = 18 | pages = 2233–9 | date = Oct 1997 | pmid = 9393982 | doi = 10.1038/sj.onc.1201394 }}
*{{cite journal | author=Zhang WW, Zhang LX, Busch RK, ''et al.'' |title=Purification and characterization of a DNA-binding heterodimer of 52 and 100 kDa from HeLa cells. |journal=Biochem. J. |volume=290 ( Pt 1) |issue= |pages= 267-72 |year= 1993 |pmid= 8439294 |doi=  }}
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* {{cite journal | vauthors = Teigelkamp S, Mundt C, Achsel T, Will CL, Lührmann R | title = The human U5 snRNP-specific 100-kD protein is an RS domain-containing, putative RNA helicase with significant homology to the yeast splicing factor Prp28p | journal = RNA | volume = 3 | issue = 11 | pages = 1313–26 | date = Nov 1997 | pmid = 9409622 | pmc = 1369570 | doi = }}
*{{cite journal | author=Patton JG, Porro EB, Galceran J, ''et al.'' |title=Cloning and characterization of PSF, a novel pre-mRNA splicing factor. |journal=Genes Dev. |volume=7 |issue= 3 |pages= 393-406 |year= 1993 |pmid= 8449401 |doi= }}
+
* {{cite journal | vauthors = Straub T, Grue P, Uhse A, Lisby M, Knudsen BR, Tange TO, Westergaard O, Boege F | title = The RNA-splicing factor PSF/p54 controls DNA-topoisomerase I activity by a direct interaction | journal = The Journal of Biological Chemistry | volume = 273 | issue = 41 | pages = 26261–4 | date = Oct 1998 | pmid = 9756848 | doi = 10.1074/jbc.273.41.26261 }}
*{{cite journal | author=Clark J, Lu YJ, Sidhar SK, ''et al.'' |title=Fusion of splicing factor genes PSF and NonO (p54nrb) to the TFE3 gene in papillary renal cell carcinoma. |journal=Oncogene |volume=15 |issue= 18 |pages= 2233-9 |year= 1997 |pmid= 9393982 |doi= 10.1038/sj.onc.1201394 }}
+
* {{cite journal | vauthors = Lutz CS, Cooke C, O'Connor JP, Kobayashi R, Alwine JC | title = The snRNP-free U1A (SF-A) complex(es): identification of the largest subunit as PSF, the polypyrimidine-tract binding protein-associated splicing factor | journal = RNA | volume = 4 | issue = 12 | pages = 1493–9 | date = Dec 1998 | pmid = 9848648 | pmc = 1369720 | doi = 10.1017/S1355838298981183 }}
*{{cite journal | author=Teigelkamp S, Mundt C, Achsel T, ''et al.'' |title=The human U5 snRNP-specific 100-kD protein is an RS domain-containing, putative RNA helicase with significant homology to the yeast splicing factor Prp28p. |journal=RNA |volume=3 |issue= 11 |pages= 1313-26 |year= 1998 |pmid= 9409622 |doi= }}
+
* {{cite journal | vauthors = Meissner M, Dechat T, Gerner C, Grimm R, Foisner R, Sauermann G | title = Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB | journal = Journal of Cellular Biochemistry | volume = 76 | issue = 4 | pages = 559–66 | date = Jan 2000 | pmid = 10653975 | doi = 10.1002/(SICI)1097-4644(20000315)76:4<559::AID-JCB4>3.0.CO;2-U }}
*{{cite journal | author=Straub T, Grue P, Uhse A, ''et al.'' |title=The RNA-splicing factor PSF/p54 controls DNA-topoisomerase I activity by a direct interaction. |journal=J. Biol. Chem. |volume=273 |issue= 41 |pages= 26261-4 |year= 1998 |pmid= 9756848 |doi= }}
+
* {{cite journal | vauthors = Urban RJ, Bodenburg Y, Kurosky A, Wood TG, Gasic S | title = Polypyrimidine tract-binding protein-associated splicing factor is a negative regulator of transcriptional activity of the porcine p450scc insulin-like growth factor response element | journal = Molecular Endocrinology | volume = 14 | issue = 6 | pages = 774–82 | date = Jun 2000 | pmid = 10847580 | doi = 10.1210/me.14.6.774 }}
*{{cite journal | author=Lutz CS, Cooke C, O'Connor JP, ''et al.'' |title=The snRNP-free U1A (SF-A) complex(es): identification of the largest subunit as PSF, the polypyrimidine-tract binding protein-associated splicing factor. |journal=RNA |volume=4 |issue= 12 |pages= 1493-9 |year= 1998 |pmid= 9848648 |doi= }}
+
* {{cite journal | vauthors = Straub T, Knudsen BR, Boege F | title = PSF/p54(nrb) stimulates "jumping" of DNA topoisomerase I between separate DNA helices | journal = Biochemistry | volume = 39 | issue = 25 | pages = 7552–8 | date = Jun 2000 | pmid = 10858305 | doi = 10.1021/bi992898e }}
*{{cite journal | author=Meissner M, Dechat T, Gerner C, ''et al.'' |title=Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB. |journal=J. Cell. Biochem. |volume=76 |issue= 4 |pages= 559-66 |year= 2000 |pmid= 10653975 |doi= }}
+
* {{cite journal | vauthors = Akhmedov AT, Lopez BS | title = Human 100-kDa homologous DNA-pairing protein is the splicing factor PSF and promotes DNA strand invasion | journal = Nucleic Acids Research | volume = 28 | issue = 16 | pages = 3022–30 | date = Aug 2000 | pmid = 10931916 | pmc = 108454 | doi = 10.1093/nar/28.16.3022 }}
*{{cite journal | author=Urban RJ, Bodenburg Y, Kurosky A, ''et al.'' |title=Polypyrimidine tract-binding protein-associated splicing factor is a negative regulator of transcriptional activity of the porcine p450scc insulin-like growth factor response element. |journal=Mol. Endocrinol. |volume=14 |issue= 6 |pages= 774-82 |year= 2000 |pmid= 10847580 |doi= }}
+
* {{cite journal | vauthors = de Vries H, Rüegsegger U, Hübner W, Friedlein A, Langen H, Keller W | title = Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors | journal = The EMBO Journal | volume = 19 | issue = 21 | pages = 5895–904 | date = Nov 2000 | pmid = 11060040 | pmc = 305781 | doi = 10.1093/emboj/19.21.5895 }}
*{{cite journal | author=Straub T, Knudsen BR, Boege F |title=PSF/p54(nrb) stimulates "jumping" of DNA topoisomerase I between separate DNA helices. |journal=Biochemistry |volume=39 |issue= 25 |pages= 7552-8 |year= 2000 |pmid= 10858305 |doi= }}
+
* {{cite journal | vauthors = Dye BT, Patton JG | title = An RNA recognition motif (RRM) is required for the localization of PTB-associated splicing factor (PSF) to subnuclear speckles | journal = Experimental Cell Research | volume = 263 | issue = 1 | pages = 131–44 | date = Feb 2001 | pmid = 11161712 | doi = 10.1006/excr.2000.5097 }}
*{{cite journal | author=Akhmedov AT, Lopez BS |title=Human 100-kDa homologous DNA-pairing protein is the splicing factor PSF and promotes DNA strand invasion. |journal=Nucleic Acids Res. |volume=28 |issue= 16 |pages= 3022-30 |year= 2000 |pmid= 10931916 |doi= }}
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* {{cite journal | vauthors = Mathur M, Tucker PW, Samuels HH | title = PSF is a novel corepressor that mediates its effect through Sin3A and the DNA binding domain of nuclear hormone receptors | journal = Molecular and Cellular Biology | volume = 21 | issue = 7 | pages = 2298–311 | date = Apr 2001 | pmid = 11259580 | pmc = 86864 | doi = 10.1128/MCB.21.7.2298-2311.2001 }}
*{{cite journal | author=de Vries H, Rüegsegger U, Hübner W, ''et al.'' |title=Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. |journal=EMBO J. |volume=19 |issue= 21 |pages= 5895-904 |year= 2000 |pmid= 11060040 |doi= 10.1093/emboj/19.21.5895 }}
+
* {{cite journal | vauthors = Shav-Tal Y, Cohen M, Lapter S, Dye B, Patton JG, Vandekerckhove J, Zipori D | title = Nuclear relocalization of the pre-mRNA splicing factor PSF during apoptosis involves hyperphosphorylation, masking of antigenic epitopes, and changes in protein interactions | journal = Molecular Biology of the Cell | volume = 12 | issue = 8 | pages = 2328–40 | date = Aug 2001 | pmid = 11514619 | pmc = 58597 | doi = 10.1091/mbc.12.8.2328 }}
*{{cite journal | author=Dye BT, Patton JG |title=An RNA recognition motif (RRM) is required for the localization of PTB-associated splicing factor (PSF) to subnuclear speckles. |journal=Exp. Cell Res. |volume=263 |issue= 1 |pages= 131-44 |year= 2001 |pmid= 11161712 |doi= 10.1006/excr.2000.5097 }}
+
* {{cite journal | vauthors = Zhang Z, Carmichael GG | title = The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs | journal = Cell | volume = 106 | issue = 4 | pages = 465–75 | date = Aug 2001 | pmid = 11525732 | doi = 10.1016/S0092-8674(01)00466-4 }}
*{{cite journal | author=Mathur M, Tucker PW, Samuels HH |title=PSF is a novel corepressor that mediates its effect through Sin3A and the DNA binding domain of nuclear hormone receptors. |journal=Mol. Cell. Biol. |volume=21 |issue= 7 |pages= 2298-311 |year= 2001 |pmid= 11259580 |doi= 10.1128/MCB.21.7.2298-2311.2001 }}
+
* {{cite journal | vauthors = Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI | title = Directed proteomic analysis of the human nucleolus | journal = Current Biology | volume = 12 | issue = 1 | pages = 1–11 | date = Jan 2002 | pmid = 11790298 | doi = 10.1016/S0960-9822(01)00650-9 }}
*{{cite journal | author=Shav-Tal Y, Cohen M, Lapter S, ''et al.'' |title=Nuclear relocalization of the pre-mRNA splicing factor PSF during apoptosis involves hyperphosphorylation, masking of antigenic epitopes, and changes in protein interactions. |journal=Mol. Biol. Cell |volume=12 |issue= 8 |pages= 2328-40 |year= 2002 |pmid= 11514619 |doi= }}
+
* {{cite journal | vauthors = Sewer MB, Nguyen VQ, Huang CJ, Tucker PW, Kagawa N, Waterman MR | title = Transcriptional activation of human CYP17 in H295R adrenocortical cells depends on complex formation among p54(nrb)/NonO, protein-associated splicing factor, and SF-1, a complex that also participates in repression of transcription | journal = Endocrinology | volume = 143 | issue = 4 | pages = 1280–90 | date = Apr 2002 | pmid = 11897684 | doi = 10.1210/en.143.4.1280 }}
*{{cite journal | author=Zhang Z, Carmichael GG |title=The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs. |journal=Cell |volume=106 |issue= 4 |pages= 465-75 |year= 2001 |pmid= 11525732 |doi= }}
 
*{{cite journal | author=Andersen JS, Lyon CE, Fox AH, ''et al.'' |title=Directed proteomic analysis of the human nucleolus. |journal=Curr. Biol. |volume=12 |issue= 1 |pages= 1-11 |year= 2002 |pmid= 11790298 |doi= }}
 
*{{cite journal  | author=Sewer MB, Nguyen VQ, Huang CJ, ''et al.'' |title=Transcriptional activation of human CYP17 in H295R adrenocortical cells depends on complex formation among p54(nrb)/NonO, protein-associated splicing factor, and SF-1, a complex that also participates in repression of transcription. |journal=Endocrinology |volume=143 |issue= 4 |pages= 1280-90 |year= 2002 |pmid= 11897684 |doi=  }}
 
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Latest revision as of 06:12, 11 September 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

n/a

n/a

RefSeq (protein)

n/a

n/a

Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Splicing factor, proline- and glutamine-rich is a protein that in humans is encoded by the SFPQ gene.[1][2]

Interactions

SFPQ has been shown to interact with PTBP1,[1][3] NONO,[4] CDC5L[5] and Ubiquitin C.[6]

References

  1. 1.0 1.1 Patton JG, Porro EB, Galceran J, Tempst P, Nadal-Ginard B (Mar 1993). "Cloning and characterization of PSF, a novel pre-mRNA splicing factor". Genes & Development. 7 (3): 393–406. doi:10.1101/gad.7.3.393. PMID 8449401.
  2. "Entrez Gene: SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)".
  3. Meissner M, Dechat T, Gerner C, Grimm R, Foisner R, Sauermann G (Jan 2000). "Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB". Journal of Cellular Biochemistry. 76 (4): 559–66. doi:10.1002/(SICI)1097-4644(20000315)76:4<559::AID-JCB4>3.0.CO;2-U. PMID 10653975.
  4. Peng R, Dye BT, Pérez I, Barnard DC, Thompson AB, Patton JG (Oct 2002). "PSF and p54nrb bind a conserved stem in U5 snRNA". RNA. 8 (10): 1334–47. doi:10.1017/S1355838202022070. PMC 1370341. PMID 12403470.
  5. Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI (Dec 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". The EMBO Journal. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.
  6. Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (Sep 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. PMID 16169070.

Further reading


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