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Haploview[1] is a commonly used bioinformatics software tool which is designed to analyze and visualize patterns of linkage disequilibrium in genetic data. Haploview also provides functionality for performing association studies, choosing tagSNPs[2] and estimating haplotype frequencies. Haploview is developed and maintained by Dr. Mark Daly's lab at the MIT/Harvard Broad Institute.


  1. Barrett J.C., Fry B., Maller J., Daly M.J. (2005). "Haploview: analysis and visualization of LD and haplotype maps". Bioinformatics. 21: 263–265.
  2. de Bakker P. I., Yelensky R., Pe'er I., Gabriel S. B., Daly M. J., Altshuler D. (2005). "Efficiency and power in genetic association studies" (PDF). Nature Genetics. 37: 1217–1223.

External links

Haploview Homepage